Petascale computing is coming of age, opening powerful new modeling opportunities for CITRIS applications.
Dear Members and Friends of CITRIS,
I
am just back from Taiwan, where we held the second CITRIS-Asia Research
Symposium at the National Taiwan University in Taipei. I'm pleased to
report that our Pan-Pacific relationships continue to flourish and
grow, and that the application of innovative technologies to the
service of society is a mission that resonates as well with the
scientific community in Asia as it does here.
The
power of technology to bridge gaps and bring people together is clearly
reflected in the story below about Noor, a project that bridges
centuries as well as continents. Visiting Fellow Steve Beck and his
colleagues on Noor are working to expose the mathematical and
geometrical principles underlying the famous mosaic tile patterns that
grace mosques and palaces throughout the Islamic world. The work
reflects the power of technology and art, thoughtfully applied, to
bridge important cultural gaps by revealing shared values of truth and
beauty.
Also in this issue of the newsletter, we
take a look at the dawn of a new age in supercomputing—the coming of
the massively parallel petascale computers. Making these machines
available to a full range of California's top researchers will open up
new worlds in the fields of medicine, climate research, earthquake
prediction, and energy production and conservation. CITRIS researchers
James Demmel and Kathy Yelick are playing key roles in developing the
architecture, systems software, and algorithms that will give our
scientists full access to the power of these new machines. The work of
Demmel and Yelick represents not only the future of high-end scientific
computing, but also the way forward for smaller parallel computers,
including the newest generations of PCs and hand-held devices. It is in
the academic scientific computing arena that engineers like Demmel and
Yelick have the know-how to negotiate the challenges of parallel
processing on a large scale. Partnerships between such researchers and
the private computer makers that need their expertise will be an
important and exciting source of innovation here at CITRIS.
Professor Shankar Sastry
Director
Center for Information Technology Research in the Interest of Society
CITRIS Awards, Honors, & News
CITRIS Asia Research Symposium, Taiwan
Our CITRIS-Asia research symposium took place on March 27 in Barry Lam
Hall at National Taiwan University in Taipei, with more than 150
attendees. Faculty members gave technical talks throughout the day, and
photos and presentations are now online. http://www.citris-uc.org/Taiwan-2007
The Innovation in Services Conference
Join us for a conference on Innovations in Services on April 26-28 at
the Haas School of Business at UC Berkeley, sponsored by Tekes. http://www.citris-uc.org/Services-April-2007
Research Exchange talks on-line
Videos from our ongoing CITRIS Research Exchange can be found at http://www.citris-uc.org/node/3789.
This semester, we have had engaging talks on energy, sustainability,
health care and emerging regions, among others. These popular talks are
held every Wednesday at noon on the UC Berkeley campus and broadcast
on-line at mms://media.citris.berkeley.edu/webcast the day and time of the event.
CITRIS White Paper competition
Open to undergraduate and graduate students at all four CITRIS
campuses, the White Paper Competition will award $25K to students who
present the best multidisciplinary research project that demonstrates
the capacity of IT to help address a major societal challenge. The
deadline is April 23, 2007. http://contest.berkeley.edu/contest_pages/1
New "hyperlens" brings scientists closer to nanoscale optical imaging
Scientists at the University of California, Berkeley, have developed a
"hyperlens" that brings them one major step closer to the goal of
nanoscale optical imaging. The new hyperlens is capable of projecting a
magnified image of a pair of nanowires spaced 150 nanometers apart onto
a plane up to a meter away. http://www.berkeley.edu/news/media/releases/2007/03/22_hyperlens.shtml
Topping Out ceremony marks milestone for CITRIS Headquarters
The CITRIS Headquarters Building reached a milestone on March 2nd,
during a Topping Out ceremony which marked the placement of the highest
and final steel beam. The gold and blue painted beam was signed by all
the dignitaries present then hoisted into the air and placed atop the
building. http://www.cs.berkeley.edu/~sequin/BUILDINGS/DHN_Replace/Photos/2007_0302_topout_ceremony/
PEER leading way for Tall Buildings Initiative
Pacific Earthquake Engineering Research Center is leading the Tall
Buildings Initiative, a collaborative of universities, government
agencies and the engineering community that develops design criteria to
ensure safe and usable high-rises following future earthquakes. http://peer.berkeley.edu/
New UC Davis Center Helps Small Water Systems Succeed
A new UC Davis program aims to help small drinking-water suppliers that
are struggling to meet state and federal standards. The Center for
Small Affordable Water Systems is part of the John Muir Institute of
the Environment, a collaboration of UC Davis experts discovering
solutions to complex environmental challenges. http://www.news.ucdavis.edu/search/news_detail.lasso?id=7992
Shedding New Light on Old Islamic Patterns
Old Islamic tile patterns that embody new math are brought to life
by CITRIS artists, architects, and engineers. The Noor Project bridges
cultures and centuries, shedding light on the geometric principles
underlying these ancient patterns and giving them new expression in
animated modern art and architecture.<!-- InstanceEndEditable -->
by <!-- InstanceBeginEditable name="Feature1Author" -->Gordy Slack<!-- InstanceEndEditable -->
(Steve Beck will present his NOOR Project at the May 2 Research Exchange at noon in 540 Cory Hall)
While the Golden Age of Islam’s mosaic tile patterns may be centuries
past, a CITRIS project is revealing them to be very relevant today. A
year ago, electronic artist, entrepreneur, and technologist Steve Beck
and his chief collaborator, UC Berkeley computer science professor
Carlo Séquin, launched NOOR, a project exploring the mathematics and
geometry underlying these intricate, mesmerizing patterns. NOOR is part
of the larger art and technology research program FIAT LUX, which aims
to study the integration of art, science and culture.
In both Farsi and Arabic, the word NOOR means light, and
though the project has many aims, chief among them, says Beck, is to
illuminate and pay homage to the great Islamic scientists, artists, and
mathematicians whose work spanned from the 7th to the 12th century.
NOOR draws explicit connections between the power of Islamic artwork
and the math that underlies it. The researchers hope it will shed light
on the depth and sophistication of an ancient culture, says
collaborator Nezar AlSayyad, Chair of the Center for Middle Eastern
Studies at UC Berkeley, and is part of the world cultural inclusion
that is a major character of the University.
Beck is best known for his seminal video art, music, and light
sculptures, some of which transform traditional themes—such as Native
American weaving patterns—into animated light displays. His video art
is in the collections of such institutes as the Museum of Modern Art,
the Whitney Museum of American Art, and the Smithsonian Hirshhorn
Museum. Beck, who received his Berkeley EECS degree in 1971, is
currently a visiting fellow in the College of Engineering at UC
Berkeley and also an Executive in Residence at UC Berkeley’s Center for
Entrepreneurship and Technology.
Séquin, a world-renowned expert in computer graphics who has long been
using computers to design complex sculptural forms, says that the
project “employs sophisticated generative algorithms to demonstrate how
some of the intricate patterns may have evolved from simple
line-and-circle drawings.”
The project pays homage to the profound thinkers and mathematicians of
centuries ago, says Beck, but it is also an exploration of very modern
themes.
The February 23, 2007, issue of Science, for example, featured an article about recursive Islamic tile patterns known as girih,
which embody a mathematical principle known as the quasi-crystal.
Quasi-crystals generate patterns composed of a finite set of
interlocking units, but never repeat even if tiled infinitely in all
directions. Though only described by Western mathematicians in the
1960s, quasi-crystals were perfectly expressed in tiling patterns laid
down 500 years ago in Bukhara, Uzbekistan, for example, according to
the article in Science.
Beck, Séquin, and their collaborators are using the underlying
algorithmic principles embodied in these designs to create giant,
animated light emitting diode (LED) sculptures elaborating and
amplifying their mathematical themes. They will employ the displays as
architectural elements in new buildings or as sculptural accouterments
inside or outside of existing ones. “We are very close to securing our
first commission,” says Beck.
One of the giant animated LED displays, shown at the Berkeley EECS Annual Research Symposium (BEARS).
LED displays are energy efficient, long lasting, bright, and very
adaptable, says Beck. They can be easily attached to the outside of
buildings or other structures creating bright, lively, ever-changing
skins.
“The original tile patterns are pretty much set in time by the nature
of the medium,” says Beck. “We are introducing a temporal dimension to
the patterns by animating them.” Adding the dimension of time will
unlock and illuminate some of their mathematical and geometric themes,
he says.
The patterns, which emerged over centuries as highly stylized or
geometrized calligraphic expressions of Qur’anic passages, are still
considered sacred in the Islamic world. Beck is working closely with
Middle Eastern scholars, including AlSayyad, to ensure that none of the
images are inadvertently used in irreverent ways.
“These patterns are not just abstract mathematical expressions,”
says Séquin. “They mean many things to different people, which is one
reason they are so potent.”
The developers are hoping to install projects in UC Berkeley’s Soda
Hall, the new CITRIS Headquarters building, and in Berkeley’s Sproul
Plaza. A PBS-TV documentary exploring the historical, mathematical, and
cultural aspects of the Islamic patterns is also in the works, says
Beck.
Like Beck, Séquin has a love for mathematical geometry and says he
believes that math and art have a close evolutionary relationship. “One
of the first applications of emerging mathematical or geometrical
concepts may have been to make repetitive frieze or patterns fit
seamlessly around a bone or a clay pot,” Séquin says. “Once some
mathematical principles were clarified and expressed they helped
artists make still more complex and beautiful patterns, which inspired
more mathematical speculation and articulation.”
Carlo Séquin, Robert Birgeneau, and Steve Beck.
Such a “feedback loop” between art and math may have played an
important role in the evolution of the human brain and culture,
speculates Beck.
To examine what makes these patterns resonate, NOOR will look at their
effect on the retina, optic nerve, and visual cortex. Beck is in
conversation with Stephen Palmer, director of UC Berkeley’s Visual
Perception Lab. In addition to the physiological effects, Beck also
wants to study the psychological impact of viewing the geometric
patterns.
In the same way that Islamic leaders chose to decorate their mosques
and palaces with these patterns to inspire awe and reverence, Beck and
Séquin suspect that putting such geometrically evocative sculptures
around computer science, math, and engineering students will help them
to internalize the logos and beauty of the forms.
“By presenting images pertinent to mathematics, science, and
engineering we hope to trigger perceptions—maybe subconscious ones—that
would have a favorable effect,” says Beck. “Not to mention the aesthetic enhancement of these areas. These things are really beautiful.”
A. Richard Newton, Executive Producer (In Memoriam), was instrumental
in getting the project off the ground by introducing Beck to Khalid
Alireza (M.S. in IEOR, UCB ’71) in October 2006. Part of Alireza’s
company, Xenel International USA—based in Westlake Village, CA—added a
$50,000 seed grant to an in-kind gift in support of the NOOR research
of $90,000 from Beck-Tech Corp. in Berkeley. (No University or public
funds have been used for this research.)
Though NOOR introduces a temporal element into otherwise static
patterns by animating them, the project still deals with the timeless
truths of both geometry and aesthetic beauty, says Séquin. Unlike much
contemporary conceptual art, art made from geometric principles will
always be recognized as beautiful and important, Séquin says, even if
re-discovered thousands of years from now.
If beauty is truth, and if truth is practical, then these patterns may
even eventually be useful in the development of CMOS semiconductor
devices, nanotechnology, and MEMS, a possibility NOOR will also
explore, says Beck.
Petascale computing is coming of age, opening powerful new modeling
opportunities for CITRIS applications. From the exploration of protein
folding at the atomic level to long-range climate predictions and
turbulence studies, the new computers will give a broad range of users
processing power heretofore reserved for weapons research.<!-- InstanceEndEditable -->
by <!-- InstanceBeginEditable name="Feature2Author" -->Gordy Slack<!-- InstanceEndEditable -->
CITRIS researchers will soon have access to a new generation of
high-performance supercomputers far more powerful than those available
today. Known as petascale computers, these new machines will be capable
of conducting 10^15 floating-point operations per second (petaflops).
These parallel machines may employ more than a million processors and
will be able to handle huge data sets. Until now, they have been mainly
the domain of military and other national security applications. With
the delivery of a new petascale computer to Lawrence Berkeley National
Laboratory (LBNL), and with the possibility of a Berkeley team helping
to host another one at Lawrence Livermore National Laboratory (LLNL),
researchers working on climate analysis, genomics, environmental
monitoring, protein analysis, earthquake, nanoscience, and other
CITRIS-related fields will gain access to powerful new modeling tools
within the next four years.
By employing a much higher resolution of analysis, seismologists here,
for instance, will be able to do block-by-block modeling of earthquakes
at different intensities, according to James Demmel, Professor of
Mathematics and Computer Science at UC Berkeley and founding Chief
Scientist at CITRIS.
James Demmel, CITRIS founding Chief Scientist.
"Until now, models have said, 'this huge area will vibrate about
like this.' But that is not good enough to figure out which buildings
need which kinds of retrofitting," says Demmel. "But with a petascale
machine, you can refine the resolution of your simulations to determine
which blocks and buildings are especially endangered and how best to
retrofit them. It would enable a science-based approach to earthquake
preparedness and response."
The world of huge parallel computers on the petascale has arrived.
If past is indeed prelude and speed increases continue at current
rates, within a decade, at least half of the world's 500 fastest
computers will probably be petascale.
Access to such processing power will allow researchers in the health
and life sciences to engineer proteins down to the atomic level,
opening new doors to the treatment of several types of diseases.
Climate analysis is another key field where petascale simulation will
lead to much better modeling, enabling science-based approaches to
emissions policy or to predicting the effects of global warming on air
quality, agriculture, wildfires, and water supplies.
Scientists studying energy production and efficiency will also get new
tools, permitting heretofore over-complex modeling of turbulence
conditions and other factors that determine fuel efficiency, for
instance, or the design of bio-fuels.
Before these new giants can be fully exploited, some big challenges
must first be addressed. UC Berkeley computer science professor
Katherine Yelick is working with colleagues in the Parallelism Lab to
bring such CITRIS-type applications and the petascale hardware and
systems software together. UCB computer science professor Katherine Yelick."We are trying to expose the best features of the underlying hardware to the software," says Yelick."The
hardware designers are trying to innovate and put in fast networks or
networks with very interesting connectivity patterns, and we want to
take full advantage of that," she says.
Yelick has one foot in the world of system-level software and the other
in that of hardware development, which makes her particularly valuable
to the coordination effort. She and her team have developed new
compilers and programming languages (one based on C and another based
on Java)for the new petascale computers.
One big challenge is the problem of pacing and managing the information
flow through hundreds of thousands of processors. "It is like trying to
get a million people coordinated and doing their jobs at exactly the
same time," says Yelick.
Petascale machines not only have more chips, but each chip has more
processors than earlier generation supercomputers. Coordinating the
flow and sharing of so much activity is a job requiring new algorithms
and new approaches to applications programming, too, says Yelick.
This is a big problem because the work the computer is trying to do is
not equally distributed among all of its processors. In modeling
weather, for example, the Earth's surface can be divided into equal
sized parts, and each given a dedicated processor. But if there is a
hail storm somewhere, for example, there will suddenly be a lot of
significant activity in the processors associated with those parts of
the model. If the rest of the system has to wait for the processors
working on the hailstorm, it can lose a lot of time, says Yelick.
In addition to such load imbalance issues, the team is working to
minimize the time it takes for information to travel around these
computers, some of which can be as big as a tennis court.
"Light travels pretty slowly," explains Demmel. "if processors on
opposite sides of the computer have to send huge amounts of information
back and forth, the time adds up fast."
Racks of servers at UCSC.
While Yelick straddles the gap between the systems-level programming
and hardware design, Demmel straddles that between the applied math and
the applications-level programming. "People who can work across one or
more of those boundaries are very important in making these kinds of
projects hang together," says Yelick.
People like Yelick and Demmel are finding themselves thrust from the
rarified theoretical atmosphere of the high-end research computer world
to what will soon be the center of a revolution in personal computing.
As personal computers are forced to embrace parallel processors, they
will face some of the same challenges as these high-end scientific
computers.
In addition to the NSF bid to design and host a new peta computer for
LLNL, Demmel and Yelick are just now completing another proposal for an
Intel- and Microsoft-funded center for studying parallel computing
applications for personal computers, games, hand-held devices and other
commercial products.
"Now that Moore's Law can no longer be met by making single chips
faster, everything is going to have to be parallel," says Demmel. "The
computer industry will hit a wall unless it figures out how to deal
with large-scale parallelism."